Installation

Local Installation

  1. Clone the PaleoSTeHM repository:

git clone https://github.com/radical-collaboration/PaleoSTeHM.git

  1. Create and activate a Python virtual environment, and install PaleoSTeHM’s Python dependencies in it. Using conda:

cd PaleoSTeHM/
conda env create -f environment.yml
conda activate ve3PaleoSTeHM

  1. Load Jupyter Lab (or Jupyter Notebook) and navigate to the tutorial of interest:

jupyter-lab

Google Colab Installation

The following are instructions on how to run PaleoSTeHM tutorials through Google Colab. One must have a Google account and access to Google Drive to use PaleoSTeHM in this configuration.

  1. Navigate to Google Colab and select “+ New Notebook” when prompted.

  2. In the new notebook, copy and paste the following into a cell:

from google.colab import drive
drive.mount('/content/drive')
%cd /content/drive/MyDrive
!git clone https://github.com/radical-collaboration/PaleoSTeHM.git

  1. Open Google Drive and navigate to the newly created PaleoSTeHM repo. Go to the tutorial you would like to run (i.e. /PaleoSTeHM/Tutorials/1.introduction/introduction.ipynb), right-click and select “run from Google Colab”.

Pip Installation

pip install PaleoSTeHM